Input File Format

Each file in PDB format is acceptable (with .pdb or .ent extension).

Chain ID

In case your protein has multi chains you can run STON on selected chains. if no chain is selected, the first chain will be selected.

Distance

This the value that bounds the RMSD of the sequence. Since every pair of acids of the matching has distance less than the value of this option thus the RMSD will be bounded by this value.

Rotation