MCQ.Net

MCQ-Net is a heuristic algorithm based on the simulated annealing as a method for constructing phylogenetic networks from weighted quartets. MCQ-Net finds a circular ordering for taxa and then extracts splits from the circular ordering and uses non-negative least squares for weighting splits. One can use SplitsTree4 program to draw phylogenetic networks from weighted splits.

 

 

You can download program here

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