Considering energy function to detect a correct protein fold from incorrect ones is very important for protein structure prediction and protein folding. Knowledge-based mean force potentials are certainly the most popular kind of interaction function for protein threading and derived from statistical analyses of interacting groups in experimentally determined protein structures.

We developed a new approach to calculate a knowledge-based potential of mean-force using pairwise residue contact area.

  The web base program will be upload in a few days.

You can download the executable program here.


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